That option follows the depth chart for every quarter. What I'm suggesting is that you should be able to set a different player rotation lineup for the 4th quarter, since you already have the option of letting your coach decide a separate rotation for the final quarter.
I understand what you are suggesting. If you set your best rotation in the depth chart, then you obviously will have best rotation in every quarter, including the fourth.
My take is that having managers tick a gazillion of boxes is unpractical and unnecessary, as long as there is a functional structure that will allow you to set a lineup and be fairly sure of what the team will play like.
"I don't know half of you half as well as I should like; and I like less than half of you half as well as you deserve."